Kristian Alikaj
Bioinformatics
Studying at Freie Universität Berlin, I specialize in omics analysis, bioinformatics software development, and applying machine learning to biological data and am proficient in C++, Python, R, and SQL, and have some experience with Julia, and Haskell.
Get in touchProjects
Bioinformatics & C++
Global Alignment, Horspool Algorithm, Aho-Corasick- and Q-Gram Index Search, and more.
MULTI-OMICS Integration
I have hands-on experience in integrating and analyzing transcriptomics, (phospho)proteomics and metabolomics data, using advanced bioinformatics tools to identify and undeerstand key molecular pathways, networks and interactions.
Pytorch/Deep Learning: ECG Silent Heart attacks
A machine learning project using Pytorch for health in AI. Skills gained during an Internship at the Berlin Institute of Health.
Diabetes Prediction
A web app to predict the risk of diabetes being trained on patient data. Backend with Python [Machine Learning] and Frontend with HTML/CSS via Flask.
Bioinformatics Tools
A web app showcasing bioinformatics tools for suffix arrays, Burrows-Wheeler transforms, FM indices, and DNA to protein translation.
scRNA-Analysis
Experience performing analysis using R (Seurat), Python (Scanpy), lately passionate about Julia.
App: Phylogenetic Trees
A web app for constructing phylogenetic trees using various clustering methods and algorithms, like Hierarchical Clustering, the Neighbor-Joining algorithm, or Maximum Parsimony.
SNP/Variant Calling Analysis
Experience with fastQC, bwa, samtools, bedtools, bcf/vcftools, or gatk in bash/Unix, as well as automatization with PyScripts (PyVCF) or workflow management systems like Snakemake
Haskell & Bioinformatics
Re-Diving into Haskell & the benefits of functional programming.